{
  "_id": "6ad1e904d3c80a766859c66c",
  "Package": "scpoisson",
  "Title": "Single Cell Poisson Probability Paradigm",
  "Version": "0.0.2",
  "Authors@R": "c(\nperson(\"Yue\", \"Pan\", email = \"yuep027@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Justin\", \"Landis\", email = \"jtlandis314@gmail.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-5501-4934\")),\nperson(\"Dirk\", \"Dittmer\", email = \"dirk_dittmer@med.unc.edu\", role = \"aut\"),\nperson(\"James S.\", \"Marron\", role = \"aut\", email = \"marron@unc.edu\"),\nperson(\"Di\", \"Wu\", role = \"aut\", email = \"did@email.unc.edu\"))",
  "Description": "Useful to visualize the Poissoneity (an independent\nPoisson statistical framework, where each RNA measurement for\neach cell comes from its own independent Poisson distribution)\nof Unique Molecular Identifier (UMI) based single cell RNA\nsequencing (scRNA-seq) data, and explore cell clustering based\non model departure as a novel data representation.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "RdMacros": "Rdpack",
  "NeedsCompilation": "no",
  "Author": "Yue Pan [aut, cre], Justin Landis [aut] (ORCID:\n<https://orcid.org/0000-0001-5501-4934>), Dirk Dittmer [aut],\nJames S. Marron [aut], Di Wu [aut]",
  "Maintainer": "Yue Pan <yuep027@gmail.com>",
  "Packaged": {
    "Date": "2026-10-16 08:04:59 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev",
  "Repository": "https://yuepan027.r-universe.dev",
  "Date/Publication": "2025-12-20 02:17:41 UTC",
  "RemoteUrl": "https://github.com/cran/scpoisson",
  "RemoteRef": "HEAD",
  "RemoteSha": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
  "_user": "yuepan027",
  "_type": "src",
  "_file": "scpoisson_0.0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/aa25e5a258a8d2f9949e722fc090fc8d615c5b6475d3ef61c443cb1429904f69",
  "_filesize": 893778,
  "_sha256": "aa25e5a258a8d2f9949e722fc090fc8d615c5b6475d3ef61c443cb1429904f69",
  "_expires": "2027-01-24T09:06:10.000Z",
  "_created": "2026-10-16T08:04:59.000Z",
  "_published": "2026-10-16T09:06:11.947Z",
  "_buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116875989276,
      "time": 250,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12033730299"
    },
    {
      "job": 116875989324,
      "time": 255,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12033725342"
    },
    {
      "job": 116875989516,
      "time": 211,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12036750301"
    },
    {
      "job": 116875989182,
      "time": 202,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12035319705"
    },
    {
      "job": 116873800452,
      "time": 365,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12033532610"
    },
    {
      "job": 116875989228,
      "time": 141,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12033458239"
    },
    {
      "job": 116875989187,
      "time": 141,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12032688845"
    },
    {
      "job": 116875989464,
      "time": 146,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12033099695"
    },
    {
      "job": 116875989292,
      "time": 172,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12032484315"
    }
  ],
  "_upstream": "https://github.com/cran/scpoisson",
  "_commit": {
    "id": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
    "author": "Yue Pan <yuep027@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.2\n",
    "time": 1766197061
  },
  "_maintainer": {
    "name": "Yue Pan",
    "email": "yuep027@gmail.com",
    "login": "yuepan027",
    "description": "",
    "uuid": 109984500
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "glmpca",
      "role": "Imports"
    },
    {
      "package": "Seurat",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "Rdpack",
      "role": "Imports"
    },
    {
      "package": "SeuratObject",
      "role": "Imports"
    },
    {
      "package": "WGCNA",
      "role": "Imports"
    },
    {
      "package": "broom",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "renv",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "qpdf",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-51",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.0.2",
      "date": "2025-12-20"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "yuepan027",
      "count": 2,
      "uuid": 109984500
    }
  ],
  "_userbio": {
    "uuid": 109984500,
    "type": "user",
    "name": "YuePan027",
    "followers": 0
  },
  "_downloads": {
    "count": 330,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scpoisson"
  },
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/scpoisson.html",
    "LICENSE"
  ],
  "_realowner": "yuepan027",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2022-08-17"
    },
    {
      "version": "0.0.2",
      "date": "2025-12-20"
    }
  ],
  "_exports": [
    "adj_CDF_logit",
    "diff_gene_list",
    "get_example_data",
    "HclustDepart",
    "LouvainDepart",
    "new_scppp",
    "para_est_new",
    "qqplot_env_pois",
    "scppp"
  ],
  "_help": [
    {
      "page": "adj_CDF_logit",
      "title": "A novel data representation based on Poisson probability",
      "topics": [
        "adj_CDF_logit",
        "adj_CDF_logit.matrix",
        "adj_CDF_logit.scppp"
      ]
    },
    {
      "page": "clust_clean",
      "title": "Cluster label clean",
      "topics": [
        "clust_clean"
      ]
    },
    {
      "page": "cluster_size",
      "title": "Cluster size",
      "topics": [
        "cluster_size"
      ]
    },
    {
      "page": "diff_gene_list",
      "title": "Differential expression analysis",
      "topics": [
        "diff_gene_list",
        "diff_gene_list.matrix",
        "diff_gene_list.scppp"
      ]
    },
    {
      "page": "fwer_cutoff-shc",
      "title": "get FWER cutoffs for shc object",
      "topics": [
        "fwer_cutoff-shc",
        "fwer_cutoff.shc"
      ]
    },
    {
      "page": "get_example_data",
      "title": "get example data",
      "topics": [
        "get_example_data"
      ]
    },
    {
      "page": "HclustDepart",
      "title": "Cluster cells in a recursive way",
      "topics": [
        "HclustDepart",
        "HclustDepart.matrix",
        "HclustDepart.scppp"
      ]
    },
    {
      "page": "interpolate",
      "title": "Linear interpolation for one sample given reference sample",
      "topics": [
        "interpolate"
      ]
    },
    {
      "page": "logit",
      "title": "Logit transformation",
      "topics": [
        "logit"
      ]
    },
    {
      "page": "LouvainDepart",
      "title": "Louvain clustering using departure as data representation",
      "topics": [
        "LouvainDepart",
        "LouvainDepart.matrix",
        "LouvainDepart.scppp"
      ]
    },
    {
      "page": "nboot_small",
      "title": "Random sample generation function to generate sets of samples from theoretical Poisson distribution.",
      "topics": [
        "nboot_small"
      ]
    },
    {
      "page": "new_quantile",
      "title": "A more \"continuous\" approximation of quantiles of samples with a few integer case",
      "topics": [
        "new_quantile"
      ]
    },
    {
      "page": "new_quantile_pois",
      "title": "A more \"continuous\" approximation of quantiles from the theoretical Poisson distribution.",
      "topics": [
        "new_quantile_pois"
      ]
    },
    {
      "page": "new_scppp",
      "title": "Generate New scppp object",
      "topics": [
        "new_scppp"
      ]
    },
    {
      "page": "para_est_new",
      "title": "Parameter estimates based on two-way approximation",
      "topics": [
        "para_est_new"
      ]
    },
    {
      "page": "print.scppp",
      "title": "Print scppp objects",
      "topics": [
        "print.scppp"
      ]
    },
    {
      "page": "qq_interpolation",
      "title": "Paired quantile after interpolation between two samples",
      "topics": [
        "qq_interpolation"
      ]
    },
    {
      "page": "qqplot_env_pois",
      "title": "Q-Q plot comparing samples with a theoretical Poisson distribution",
      "topics": [
        "qqplot_env_pois",
        "qqplot_env_pois.scppp"
      ]
    },
    {
      "page": "qqplot_small_test",
      "title": "Q-Q plot comparing two samples with small discrete counts",
      "topics": [
        "qqplot_small_test"
      ]
    },
    {
      "page": "scppp",
      "title": "Generate New scppp object",
      "topics": [
        "scppp"
      ]
    },
    {
      "page": "sigp",
      "title": "Significance for first split using sigclust2",
      "topics": [
        "sigp"
      ]
    },
    {
      "page": "theme_dirk",
      "title": "Dirk theme ggplots",
      "topics": [
        "theme_dirk"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "askpass",
    "backports",
    "base64enc",
    "BH",
    "bitops",
    "broom",
    "bslib",
    "cachem",
    "caTools",
    "checkmate",
    "cli",
    "cluster",
    "codetools",
    "colorspace",
    "commonmark",
    "cowplot",
    "cpp11",
    "crosstalk",
    "curl",
    "data.table",
    "deldir",
    "digest",
    "doParallel",
    "dotCall64",
    "dplyr",
    "dqrng",
    "dynamicTreeCut",
    "evaluate",
    "farver",
    "fastcluster",
    "fastDummies",
    "fastmap",
    "fitdistrplus",
    "FNN",
    "fontawesome",
    "foreach",
    "foreign",
    "Formula",
    "fs",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "ggrepel",
    "ggridges",
    "glmpca",
    "globals",
    "glue",
    "goftest",
    "gplots",
    "gridExtra",
    "gtable",
    "gtools",
    "here",
    "highr",
    "Hmisc",
    "htmlTable",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "ica",
    "igraph",
    "impute",
    "irlba",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "KernSmooth",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "listenv",
    "lmtest",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "memoise",
    "mime",
    "miniUI",
    "nlme",
    "nnet",
    "openssl",
    "otel",
    "parallelly",
    "patchwork",
    "pbapply",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "png",
    "polyclip",
    "preprocessCore",
    "progressr",
    "promises",
    "purrr",
    "R6",
    "RANN",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppAnnoy",
    "RcppArmadillo",
    "RcppEigen",
    "RcppHNSW",
    "RcppProgress",
    "RcppThread",
    "RcppTOML",
    "Rdpack",
    "reshape2",
    "reticulate",
    "rlang",
    "rmarkdown",
    "ROCR",
    "rpart",
    "rprojroot",
    "RSpectra",
    "rstudioapi",
    "Rtsne",
    "S7",
    "sass",
    "scales",
    "scattermore",
    "sctransform",
    "Seurat",
    "SeuratObject",
    "shiny",
    "sitmo",
    "sourcetools",
    "sp",
    "spam",
    "spatstat.data",
    "spatstat.explore",
    "spatstat.geom",
    "spatstat.random",
    "spatstat.sparse",
    "spatstat.univar",
    "spatstat.utils",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "tensor",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "uwot",
    "vctrs",
    "viridisLite",
    "WGCNA",
    "withr",
    "xfun",
    "xtable",
    "yaml",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "scpoissonmodel.Rmd",
      "filename": "scpoissonmodel.html",
      "title": "A new Poisson probability paradigm for single cell RNA-seq clustering",
      "author": "Yue Pan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installing",
        "Poissoneity of scRNA-seq data",
        "Cell clustering based on model departure",
        "References"
      ],
      "created": "2022-08-17 05:50:02",
      "modified": "2025-12-20 02:17:41",
      "commits": 2
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "scpoisson",
  "_universes": [
    "yuepan027"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-10-16T08:08:37.000Z",
      "distro": "resolute",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/a0386f8d5ebc1e1827e3e2386bdfbf857ffa0712bfb96a83afb640485ca41564",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-10-16T08:08:41.000Z",
      "distro": "resolute",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/99b10dbca3d41f5c58f49f410fe14d62f7021ff18bac8b95809654f86c0c8feb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-10-16T09:04:41.000Z",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/9229bcf38d07fd772e4537d9acf61c6d6504431998e93bb27848d411d61a3365",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-10-16T09:00:40.000Z",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/e08dc6acb20c5ddeb33bea2bc77f641cc4dd5a6c460b601f285bf022073dffee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.2",
      "date": "2026-10-16T08:07:45.000Z",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/993eb624fdba44b08c120f57e985c72d0f39bf7b3fa38adeabcef0558f8e08f9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-10-16T08:06:37.000Z",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/ac1bd3fa4ac576de577f0aa8bf8204448059ee602f73a04952c831e217206da0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-10-16T08:06:46.000Z",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/804a779f820c76105956c6cecfc4df3a17f3ed225f94b0d32868f171c3a01f4d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-10-16T08:07:18.000Z",
      "commit": "23486c0ba91caa35b6b487cd1f2ae7c34abece48",
      "fileid": "https://r2.ropensci.org/eed54fd8aa3c2e8016b1f2ec14a7df8c0c402d7d4a87789dd4bd8d5b5045a121",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yuepan027/actions/runs/38870652047"
    }
  ]
}